get_markers: get_markers

In SofieVG/FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

get_markers

Description

Get marker names, given a flowFrame. As available in "desc". If this is NA, defaults to channel name.

Usage

get_markers(ff, markers)

Arguments

ff	The flowFrame of interest
markers	Vector with markers or channels of interest

Value

Corresponding marker names

See Also

get_channels

Examples

   # Read the flowFrame
   fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
   ff <- flowCore::read.FCS(fileName)
   GetChannels(ff, c("FSC-A", "CD3", "FITC-A"))
   GetMarkers(ff, c("FSC-A", "CD3", "FITC-A"))

SofieVG/FlowSOM documentation built on Feb. 1, 2024, 11:33 a.m.