SofieVG/FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data

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SofieVG/FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
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API

API for SofieVG/FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data

Global functions
%>% Man page
.onAttach Source code
AddAnnotation Man page Source code
AddBackground Man page Source code
AddFlowFrame Man page Source code
AddLabels Man page Source code
AddMST Man page Source code
AddNodes Man page Source code
AddPies Man page Source code
AddScale Man page Source code
AddStars Man page Source code
AddStarsPies Man page Source code
AggregateFlowFrames Man page Source code
AutoMaxNodeSize Man page Source code
BuildMST Man page Source code
BuildSOM Man page Source code
CountGroups Man page
DetermineNumberOfClusters Source code
Dist.MST Man page Source code
FMeasure Man page Source code
FlowSOM Man page Source code
FlowSOMSubset Man page Source code
FlowSOM_colors Man page Source code
FlowSOMmary Man page Source code
GetCVs Man page Source code
GetChannels Man page Source code
GetClusterCVs Man page Source code
GetClusterMFIs Man page Source code
GetClusterPercentagesPositive Man page Source code
GetClusters Man page Source code
GetCounts Man page Source code
GetFeatures Man page Source code
GetFlowJoLabels Man page Source code
GetMFIs Man page Source code
GetMarkers Man page Source code
GetMetaclusterCVs Man page Source code
GetMetaclusterMFIs Man page Source code
GetMetaclusterPercentagesPositive Man page Source code
GetMetaclusters Man page Source code
GetPercentages Man page Source code
GroupStats Man page Source code
Initialize_KWSP Man page Source code
Initialize_PCA Man page Source code
ManualVector Man page Source code
MapDataToCodes Man page
MetaClustering Man page Source code
MetaclusterCVs Man page Source code
MetaclusterMFIs Man page Source code
NClusters Man page Source code
NMetaclusters Man page Source code
NewData Man page Source code
ParseArcs Man page Source code
ParseEdges Man page Source code
ParseLayout Man page Source code
ParseNodeSize Man page Source code
ParseQuery Man page Source code
ParseSD Man page
Plot2DScatters Man page Source code
PlotCenters Man page Source code
PlotClusters2D Man page Source code
PlotDimRed Man page Source code
PlotFileScatters Man page Source code
PlotFlowSOM Man page Source code
PlotGroups Man page Source code
PlotLabels Man page Source code
PlotManualBars Man page Source code
PlotMarker Man page Source code
PlotNode Man page Source code
PlotNumbers Man page Source code
PlotOutliers Man page Source code
PlotOverview2D Man page Source code
PlotPies Man page Source code
PlotSD Man page Source code
PlotStarLegend Man page Source code
PlotStars Man page Source code
PlotVariable Man page Source code
Purity Man page Source code
QueryMultiple Man page Source code
QueryStarPlot Man page Source code
ReadInput Man page Source code
SOM Man page
SSE Source code
SaveClustersToFCS Man page Source code
ScaleStarHeights Man page Source code
TestOutliers Man page Source code
UpdateDerivedValues Source code
UpdateFlowSOM Man page Source code
UpdateMetaclusters Man page Source code
UpdateNodeSize Man page Source code
consensus Source code
findElbow Source code
get_channels Man page Source code
get_markers Man page Source code
gg_color_hue Man page Source code
metaClustering_consensus Man page Source code
metaClustering_hclust Source code
metaClustering_kmeans Source code
metaClustering_som Source code
print.FlowSOM Man page Source code
query_multiple Man page Source code
SofieVG/FlowSOM documentation built on Feb. 1, 2024, 11:33 a.m.

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