Files in Sz-Tim/gbPopMod
Mechanistic species distribution model for glossy buckthorn (*Frangula alnus*)
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/fn_aux.R
R/fn_demography.R
R/fn_dispersal.R
R/fn_management.R
R/fn_output.R
R/fn_sensitivity.R
R/simulate.R
README.md
data/UNH_woodlands/UNH_woodlands_summary.xlsx
data/UNH_woodlands/all boundaries/2018KingmanFarm.dbf
data/UNH_woodlands/all boundaries/2018KingmanFarm.prj
data/UNH_woodlands/all boundaries/2018KingmanFarm.shp
data/UNH_woodlands/all boundaries/2018KingmanFarm.shp.S-EISENHA-E6530.6568.4484.sr.lock
data/UNH_woodlands/all boundaries/2018KingmanFarm.shx
data/UNH_woodlands/all boundaries/2018MacdBoundary.dbf
data/UNH_woodlands/all boundaries/2018MacdBoundary.prj
data/UNH_woodlands/all boundaries/2018MacdBoundary.shp
data/UNH_woodlands/all boundaries/2018MacdBoundary.shp.S-EISENHA-E6530.7816.11124.sr.lock
data/UNH_woodlands/all boundaries/2018MacdBoundary.shx
data/UNH_woodlands/all boundaries/EAST.dbf
data/UNH_woodlands/all boundaries/EAST.sbn
data/UNH_woodlands/all boundaries/EAST.sbx
data/UNH_woodlands/all boundaries/EAST.shp
data/UNH_woodlands/all boundaries/EAST.shp.S-EISENHA-E6530.12976.12736.sr.lock
data/UNH_woodlands/all boundaries/EAST.shx
data/UNH_woodlands/all boundaries/THOMPSON.dbf
data/UNH_woodlands/all boundaries/THOMPSON.sbn
data/UNH_woodlands/all boundaries/THOMPSON.sbx
data/UNH_woodlands/all boundaries/THOMPSON.shp
data/UNH_woodlands/all boundaries/THOMPSON.shp.S-EISENHA-E6530.12976.12736.sr.lock
data/UNH_woodlands/all boundaries/THOMPSON.shx
data/UNH_woodlands/all boundaries/WEST.dbf
data/UNH_woodlands/all boundaries/WEST.sbn
data/UNH_woodlands/all boundaries/WEST.sbx
data/UNH_woodlands/all boundaries/WEST.shp
data/UNH_woodlands/all boundaries/WEST.shp.S-EISENHA-E6530.12976.12736.sr.lock
data/UNH_woodlands/all boundaries/WEST.shx
data/UNH_woodlands/all boundaries/burley.dbf
data/UNH_woodlands/all boundaries/burley.sbn
data/UNH_woodlands/all boundaries/burley.sbx
data/UNH_woodlands/all boundaries/burley.shp
data/UNH_woodlands/all boundaries/burley.shp.S-EISENHA-E6530.12976.12736.sr.lock
data/UNH_woodlands/all boundaries/burley.shx
data/UNH_woodlands/all boundaries/cwboundary.dbf
data/UNH_woodlands/all boundaries/cwboundary.sbn
data/UNH_woodlands/all boundaries/cwboundary.sbx
data/UNH_woodlands/all boundaries/cwboundary.shp
data/UNH_woodlands/all boundaries/cwboundary.shp.LSA-5PVBDH1.3412.5924.sr.lock
data/UNH_woodlands/all boundaries/cwboundary.shp.S-EISENHA-E6530.12976.12736.sr.lock
data/UNH_woodlands/all boundaries/cwboundary.shx
data/UNH_woodlands/all boundaries/davisparkbounds4.dbf
data/UNH_woodlands/all boundaries/davisparkbounds4.sbn
data/UNH_woodlands/all boundaries/davisparkbounds4.sbx
data/UNH_woodlands/all boundaries/davisparkbounds4.shp
data/UNH_woodlands/all boundaries/davisparkbounds4.shx
data/UNH_woodlands/all boundaries/dudley2.dbf
data/UNH_woodlands/all boundaries/dudley2.sbn
data/UNH_woodlands/all boundaries/dudley2.sbx
data/UNH_woodlands/all boundaries/dudley2.shp
data/UNH_woodlands/all boundaries/dudley2.shx
data/UNH_woodlands/all boundaries/hortiestbounds.dbf
data/UNH_woodlands/all boundaries/hortiestbounds.sbn
data/UNH_woodlands/all boundaries/hortiestbounds.sbx
data/UNH_woodlands/all boundaries/hortiestbounds.shp
data/UNH_woodlands/all boundaries/hortiestbounds.shx
data/UNH_woodlands/all boundaries/moorfieldsbounds.dbf
data/UNH_woodlands/all boundaries/moorfieldsbounds.sbn
data/UNH_woodlands/all boundaries/moorfieldsbounds.sbx
data/UNH_woodlands/all boundaries/moorfieldsbounds.shp
data/UNH_woodlands/all boundaries/moorfieldsbounds.shx
data/UNH_woodlands/all boundaries/saddlebackboundary.dbf
data/UNH_woodlands/all boundaries/saddlebackboundary.lock
data/UNH_woodlands/all boundaries/saddlebackboundary.sbn
data/UNH_woodlands/all boundaries/saddlebackboundary.sbx
data/UNH_woodlands/all boundaries/saddlebackboundary.shp
data/UNH_woodlands/all boundaries/saddlebackboundary.shx
data/USDA_20ac.csv
data/USDA_20ac.rda
data/USDA_20ac_mgmt.csv
data/USDA_20ac_mgmt.rda
data/USDA_9km2.csv
data/USDA_9km2.rda
data/USDA_9km2_mgmt.csv
data/USDA_9km2_mgmt.rda
data/gb/Aiello_fral-df-ann.csv
data/gb/Allen_fecundity.csv
data/gb/Allen_flower.csv
data/gb/Bibaud_flower.csv
data/gb/Eisenhaure_cut.csv
data/gb/Landcover_aggregation.xlsx
data/gb/Lee_density.csv
data/gb/Lee_emerge.csv
data/gb/Lee_fecundity.csv
data/gb/Lee_germ.csv
data/gb/Lee_juvMortality.csv
data/gb/Lee_mgmtMech.csv
data/gb/eddmaps_ME.csv
data/gb/eddmaps_NH.csv
data/gb/eddmaps_gb.csv
data/gb/gb_herbariumRecords.csv
data/gb/herbarium_records.R
data/gb/param_estimates.R
data/gb/parameter_ranges.xlsx
data/gb/pc_calculation.R
data/gb/spread_20ac.csv
data/gb/spread_9km2.csv
econ/econ_parcels_interact.R
figs/ms_figs.R
gbPopMod.Rproj
hpc/GSA_5c.R
hpc/GSA_5c.sh
hpc/GSA_hpc.R
hpc/disp_tune.R
hpc/disp_tune.sh
hpc/gb_slrm.sh
man/antilogit.Rd
man/calc_lambda.Rd
man/cell_E.Rd
man/cut_assign.Rd
man/cut_forest.Rd
man/emulate_sensitivity.Rd
man/emulation_summary.Rd
man/expand_LCs.Rd
man/expand_cnpy.Rd
man/expand_v.Rd
man/get_pt_id.Rd
man/global_sensitivity.Rd
man/grow_lambda.Rd
man/iterate_pop.Rd
man/iterate_pop_econ.Rd
man/ldd_disperse.Rd
man/logit.Rd
man/make_fruits.Rd
man/make_grid.Rd
man/make_plots_final_t.Rd
man/make_plots_gifs.Rd
man/make_plots_gridSummary.Rd
man/make_plots_lc.Rd
man/new_seedlings.Rd
man/pop_init.Rd
man/run_sensitivity.Rd
man/run_sim.Rd
man/run_sim_lambda.Rd
man/save_abundances.Rd
man/save_pars.Rd
man/sdd_disperse.Rd
man/sdd_lambda.Rd
man/sdd_set_probs.Rd
man/sdd_update_probs.Rd
man/set_control_p.Rd
man/set_g_p.Rd
man/set_sensitivity_pars.Rd
man/trt_assign.Rd
man/trt_econ.Rd
man/trt_ground.Rd
man/trt_manual.Rd
mgmt/mgmt_gis.R
mgmt/mgmt_hpc.R
mgmt/mgmt_strategies.xlsx
mgmt/p1_none.csv
mgmt/p2_stated.csv
mgmt/p3_reality.csv
mgmt/p4_aggressive.csv
out/20ac/BRT_RI.csv
out/20ac/BRT_betaDiv.csv
out/20ac/BRT_cvDev.csv
out/sdd_tune/20ac/dispersal_out.csv
sensitivity/fda_exploratory.R
sensitivity/gsa_plots.R
sensitivity/model_outline.jpeg
sensitivity/outline.xlsx
vignettes/Appendix_1.Rmd
vignettes/Appendix_2.Rmd
vignettes/Appendix_3.Rmd
vignettes/boundary_behavior.Rmd
vignettes/economic_iteration.R
vignettes/full_grid_run.Rmd
vignettes/management_controls.R
vignettes/pop_initialization.R
vignettes/sensitivity_analyses.Rmd
