edgeR_exact: Estimate differential window counts and mark significantly...

Description Usage Arguments

Description

Estimate differential window counts and mark significantly different windows using edgeR exact method for two samples

Usage

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edgeR_exact(data, which = "bait_windows", treatment_a = NULL,
  treatment_b = NULL, remove.zeros = FALSE, sig_level = 0.05)

Arguments

data

an atacr object

which

the subset of windows to consider

sig_level

the p_value to consider significant

common_control

the treatment to consider the control for all other treatments


TeamMacLean/atacr documentation built on May 9, 2019, 4:24 p.m.