extract_features_from_gff: pulls lines out of a gff file based on identifierss provided

In TeamMacLean/atacr: Analysing Capture Seq Count Data

Description

pulls lines out of a gff file based on identifierss provided

Usage

extract_features_from_gff(ids, gff, type = c("gene"), col = "ID",
  out_file = NULL, version = "3")

Arguments

ids	character vector of ids/names of feature to extract
gff	path to gff file
type	feature type of features to extract.
col	column name of GFF file containing id to use (ID)
out_file	path of file name to write. If NULL, no file is written
version	which gff version to export (Default is "3")

Value

GenomicRanges or NULL with GFF outfile.

TeamMacLean/atacr documentation built on May 9, 2019, 4:24 p.m.