API for TeamMacLean/atacr
Analysing Capture Seq Count Data

Global functions
Est.Depth	Man page
as.DGEList	Man page
as.data.frame.atacr	Man page
as.matrix.atacr	Man page
assay_matrix_to_df	Man page
athal_wt_counts	Man page
bootstrap_t	Man page
calc_quantiles	Man page
chromosome_coverage	Man page
control_window_normalise	Man page
control_window_normalise_internal	Man page
control_window_scaling_factors	Man page
count_windows_under_threshold	Man page
coverage_count_summary	Man page
coverage_summary	Man page
edgeR_exact	Man page
edgeR_multiclass	Man page
estimate_GoFs	Man page
estimate_bayes_factor	Man page
estimate_bayes_factor_multiclass	Man page
estimate_fdr	Man page
estimate_fdr_multiclass	Man page
extract_features_from_gff	Man page
find_controls_by_GoF	Man page
get_GoF_factors	Man page
get_bait_regions_from_gff	Man page
get_bait_regions_from_text	Man page
get_expected_values	Man page
get_t	Man page
gof	Man page
library_size_normalisation	Man page
library_size_normalisation_internal	Man page
library_size_scaling_factors	Man page
load_atac	Man page
load_rnaseq	Man page
ma_data	Man page
ma_plot	Man page
make_UpSetR	Man page
make_corrplot	Man page
make_counts	Man page
make_csaw_params	Man page
make_params	Man page
make_scanBamParam	Man page
make_tutorial_data	Man page
median_virtual_experiment	Man page
normalise_by_window_width	Man page
observed_expected_bins	Man page
plot.atacr	Man page
plot_GoF	Man page
plot_count_by_chromosome	Man page
plot_counts	Man page
print.atacr	Man page
qqarb	Man page
read_experiment_info	Man page
sample_correlation_plot	Man page
sample_kmeans_cluster	Man page
sample_pca_plot	Man page
scale_factor_normalise	Man page
select_data	Man page
sim_counts	Man page Man page
simulate_counts	Man page
small_counts	Man page
summary.atacr	Man page
target_count_coverage	Man page
target_count_summary	Man page
text_to_gff	Man page
treatments	Man page
view_gene	Man page
windows_below_coverage_threshold_plot	Man page