Description Usage Arguments Value
set read filters for counting from the BAM file.
1 | make_params(paired_map = TRUE, minq = 30, dedup = TRUE)
|
paired_map |
Should reads only be included if they are aligned in pairs. Default = TRUE |
minq |
The minimum mapping quality to retain a read. Default = 20 |
dedup |
Should removal of PCR duplicates be performed. Default = TRUE |
a named vector of class "atacr_params"
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