make_params: set read filters for counting from the BAM file.

Description Usage Arguments Value

Description

set read filters for counting from the BAM file.

Usage

1
make_params(paired_map = TRUE, minq = 30, dedup = TRUE)

Arguments

paired_map

Should reads only be included if they are aligned in pairs. Default = TRUE

minq

The minimum mapping quality to retain a read. Default = 20

dedup

Should removal of PCR duplicates be performed. Default = TRUE

Value

a named vector of class "atacr_params"


TeamMacLean/atacr documentation built on May 9, 2019, 4:24 p.m.