load_rnaseq: populate the result object with the...
In TeamMacLean/atacr: Analysing Capture Seq Count Data
Description
populate the result object with the RangedSummarizedExperiment from the bam files from RNA seq data. Called from make_counts() when is_rnaseq == TRUE.
Usage
1
load_rnaseq(result, filter_params, window_file, gene_id_col = "ID")
Arguments
result
list from make_counts()
filter_params
a params object, described in atacr::make_counts()
window_file
a filename of a CSV file with the bait regions
gene_id_col
a character string stating which attribute name to take from the final column of the GFF file to use for the window name in RNASeq data. Usually this is the name of the gene. Default = ID.
TeamMacLean/atacr documentation built on May 9, 2019, 4:24 p.m.
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Description
populate the result object with the RangedSummarizedExperiment from the bam files from RNA seq data. Called from make_counts() when is_rnaseq == TRUE.
Usage
1 | load_rnaseq(result, filter_params, window_file, gene_id_col = "ID")
|
Arguments
result |
list from make_counts() |
filter_params |
a params object, described in atacr::make_counts() |
window_file |
a filename of a CSV file with the bait regions |
gene_id_col |
a character string stating which attribute name to take from the final column of the GFF file to use for the window name in RNASeq data. Usually this is the name of the gene. Default = ID. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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