Description Usage Arguments Value
populate the result object with the RangedSummarizedExperiment from the bam files from ATAC seq data. Called from make_counts() when is_rnaseq == FALSE.
1 |
result |
list from make_counts() |
width |
an integer of the width of the bins the bait regions will be divided into |
filter_params |
a params object, described in atacr::make_counts() |
window_file |
a filename of a CSV file with the bait regions |
a list with window counts for bait/non-bait windows
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