Description Usage Arguments Value
normalise counts by window width (counts / window width)
1 | normalise_by_window_width(data, which = "bait_windows", per = 1000)
|
data |
a list of SummarizedExperiment objects from atacr::make_counts() |
which |
the subset of the data to normalise. Default = bait_windows |
per |
= the expression count / width gives the reads in the window divided by the width, so a 3000 nt gene with 30000 reads mapping to it will have a read count of just 10. Setting this parameter allows you to represent the counts per some other number of nts. Default = 1000, so gives the reads per kb of the gene. |
SummarizedExperiment object with normalised counts
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