windows_below_coverage_threshold_plot: generate cumulative plot of number of windows below a...
In TeamMacLean/atacr: Analysing Capture Seq Count Data
Description
Usage
Arguments
Value
Description
generate cumulative plot of number of windows below a threshold in samples
Usage
1
2
windows_below_coverage_threshold_plot(data, which = "bait_windows",
from = 0, to = 10)
Arguments
data
a list of SummarizedExperiment objects from atacr::make_counts()
which
("bait_windows") the subdivision of the genome to calculate correlations either 'whole_genome', 'bait_windows' or 'non_bait_windows'
from
(0) the lowest threshold to consider
to
(10) the highest threshold to consider
Value
ggplot2 plot
TeamMacLean/atacr documentation built on May 9, 2019, 4:24 p.m.
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Description Usage Arguments Value
Description
generate cumulative plot of number of windows below a threshold in samples
Usage
1 2 | windows_below_coverage_threshold_plot(data, which = "bait_windows",
from = 0, to = 10)
|
Arguments
data |
a list of SummarizedExperiment objects from atacr::make_counts() |
which |
("bait_windows") the subdivision of the genome to calculate correlations either 'whole_genome', 'bait_windows' or 'non_bait_windows' |
from |
(0) the lowest threshold to consider |
to |
(10) the highest threshold to consider |
Value
ggplot2 plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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