View source: R/make_PathScore_input.R
make_PathScore_input | R Documentation |
Produce a file from MAF data for use with PathScore, a web tool for identifying significantly altered pathways in cancer. See https://pathscore.publichealth.yale.edu/ and https://doi.org/10.1093/bioinformatics/btw512.
make_PathScore_input(maf, file = NULL, genome = "hg38")
maf |
An MAF-like data.table, as from preload_maf(). If the MAF has a column named |
file |
Name/path where PathScore-formatted data should be written. Will be a tab-delimited text file. |
genome |
The genome build associated with the MAF file. Must be "hg38" (default) or "hg19". |
A copy of the PathScore-formatted data as a data.table.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.