View source: R/epistasis_objectives.R
pairwise_epistasis_lik | R Documentation |
For a pair of variants (or two groups of variants), creates a likelihood function for a model of pairwise epistasis with a "strong mutation, weak selection" assumption.
pairwise_epistasis_lik(with_just_1, with_just_2, with_both, with_neither)
with_just_1 |
two-item list of baseline rates in v1/v2 for tumors with mutation in just the first variant(s) |
with_just_2 |
two-item list of baseline rates in v1/v2 for tumors with mutation in just the second variant(s) |
with_both |
two-item list of baseline rates in v1/v2 for tumors with mutation in both |
with_neither |
two-item list of baseline rates in v1/v2 for tumors with mutation n neither |
The arguments to this function are automatically supplied by ces_epistasis()
and ces_gene_epistasis()
.
A likelihood function
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.