pairwise_variant_epistasis: Calculate SIs at variant level under pairwise epistasis model

In Townsend-Lab-Yale/cancereffectsizeR: Calculate Cancer Effect Size

Calculate SIs at variant level under pairwise epistasis model

Description

Calculate SIs at variant level under pairwise epistasis model

Usage

pairwise_variant_epistasis(
  cesa,
  variant_pair,
  samples,
  conf,
  compound_variants = NULL
)

Arguments

cesa	CESAnalysis
variant_pair	2-length character of variant IDs, or 2-length numeric giving indices of CompoundVariantSet for the current two compound variants
samples	Validated samples data.table (as from select_samples())
compound_variants	If testing a pair of compound variants, the CompoundVariantSet defining them

Townsend-Lab-Yale/cancereffectsizeR documentation built on April 28, 2024, 6:14 p.m.