sort_and_validate_variant_ids | R Documentation |
Sorts input variant IDs by type, completes IDs by adding protein ID to plain variant names (e.g. "KRAS G12C"), and ensures that IDs are valid even if not present in annotations. This includes verifying that reference alleles are correct in SNV IDs and that amino acid changes are possible given the coding sequence.
sort_and_validate_variant_ids(cesa, input_ids, drop_unannotated = FALSE)
cesa |
CESAnalysis |
input_ids |
Variant names/IDs, typically from user. |
drop_unannotated |
Whether to include variants that are not annotated in output. |
List of variant_ids, with each element corresponding to one variant_type.
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