suggest_cosmic_signature_exclusions: Tissue-specific mutational signature exclusions

In Townsend-Lab-Yale/cancereffectsizeR: Calculate Cancer Effect Size

Tissue-specific mutational signature exclusions

Description

Get suggestions on signatures_to_remove for trinuc_mutation_rates for COSMIC signatures v3 and later. For details, see this article on our website.

Usage

suggest_cosmic_signature_exclusions(
  cancer_type = NULL,
  treatment_naive = NULL,
  quiet = FALSE
)

Arguments

cancer_type	See here for supported cancer type labels.
treatment_naive	give TRUE if samples were taken pre-treatment; FALSE or leave NULL otherwise.
quiet	(default false) for non-interactive use, suppress explanations and advice.

Value

a vector of signatures to feed to the trinuc_mutation_rates() signature_exclusions argument.

Townsend-Lab-Yale/cancereffectsizeR documentation built on April 28, 2024, 6:14 p.m.