View source: R/variant_counts.R
variant_counts | R Documentation |
Determine variant prevalence (and how many samples have sequencing coverage) across your MAF data, or within different groups of samples.
variant_counts(cesa, variant_ids = character(), by = character())
cesa |
CESAnalysis |
variant_ids |
variant names ("KRAS G12C") or full variant IDs. If left empty, uses
non-overlapping variants as returned by 'select_variants()' with |
by |
Optionally, a vector of one or more sample table columns. Variant prevalence and coverage data will be broken down by the groups defined by unique combinations of values in these columns. |
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