Files in VoisinneG/flowR

R-shiny interface for the analysis of flow cytometry data

R/Clustering_module.R R/Compensation_module.R R/ComputeSpill_module.R R/Dim_reduction_module.R R/GatingSets_module.R R/Gating_module.R R/ImportSpill_module.R R/Import_module.R R/Metadata_module.R R/Modules_module.R R/Plotting_module.R R/Stats_module.R R/Subsample_module.R R/Transform_module.R R/exampleModule.R R/flowR.R R/flowR_server.R R/flowR_ui.R R/not_used/saveWorkspaceUI_module.R R/patternSelection_module.R R/plotCyto_module.R R/plotGatingHierarchy_module.R R/plotGatingSet_module.R R/plotStat_module.R R/run_flowR.R R/selection_module.R R/simpleDisplay_module.R README.md doc/Modules_def.Rmd doc/tutorial.Rmd doc/user_guide.Rmd doc/windows_install.Rmd inst/download_pbmc_data.R inst/run_dev.R inst/save_data_for_example.R inst/tests/test_GvHD_dataset.R inst/tests/test_clean_data.R inst/tests/test_ggcyto.R inst/tests/test_gs.R inst/tests/test_norm.R inst/tests/tests.R inst/tests/tests_parse_wsp.R man/ClusteringUI.Rd man/CompensationUI.Rd man/ComputeSpillUI.Rd man/Dim_reductionUI.Rd man/GatingSetsUI.Rd man/GatingUI.Rd man/ImportSpillUI.Rd man/ImportUI.Rd man/MetadataUI.Rd man/ModulesUI.Rd man/PlottingUI.Rd man/StatsUI.Rd man/SubsampleUI.Rd man/TransformUI.Rd man/add_columns_from_metadata.Rd man/add_gate.Rd man/add_gate_to_plot.Rd man/add_gates_flowCore.Rd man/asinh_trans.Rd man/asinh_transform.Rd man/build_flowset_from_df.Rd man/call_plot_function.Rd man/copy_gate.Rd man/dim_reduction.Rd man/ellipse_path.Rd man/exampleModuleUI.Rd man/find_all_parent_gates.Rd man/flowR_server.Rd man/flowR_ui.Rd man/format_info.Rd man/format_plot.Rd man/getPopStatsPlus.Rd man/get_all_ancestors.Rd man/get_all_descendants.Rd man/get_cluster.Rd man/get_data_gs.Rd man/get_gate_coordinates.Rd man/get_gates_from_gs.Rd man/get_gates_from_ws.Rd man/get_gates_from_ws_diva.Rd man/get_groups_from_ws.Rd man/get_package_functions_info.Rd man/get_parameters_gs.Rd man/get_plot_data.Rd man/get_plot_data_range.Rd man/get_spillover_matrices_from_ws.Rd man/get_spillover_matrices_from_ws_diva.Rd man/get_templates_from_ws_diva.Rd man/gh_get_gate_names.Rd man/gs_get_fs_subset.Rd man/parseCompensationDiva.Rd man/parseGate.Rd man/parseGateDiva.Rd man/parseGroupNodes.Rd man/parseSampleNodes.Rd man/parseSpillover.Rd man/parseSpilloverMatrix.Rd man/parseSpilloverMatrixDiva.Rd man/parseTemplatesNodesDiva.Rd man/patternSelectionInput.Rd man/plotCytoUI.Rd man/plotGatingHierarchy.Rd man/plotGatingSetInput.Rd man/plotStatInput.Rd man/plotStatUI.Rd man/plot_bar.Rd man/plot_contour.Rd man/plot_dots.Rd man/plot_gate.Rd man/plot_gh.Rd man/plot_gs.Rd man/plot_gs_ggcyto.Rd man/plot_heatmap.Rd man/plot_hexagonal.Rd man/plot_histogram.Rd man/plot_pca.Rd man/plot_stat.Rd man/plot_tile.Rd man/plot_tree.Rd man/run_flowR.Rd man/scale_values.Rd man/selectionInput.Rd man/simpleDisplayUI.Rd man/transform_gates.Rd server.R ui.R