R/dpclust-package.R

In Wedge-Oxford/dpclust: DPClust - An R package for subclonal reconstruction of tumours using sequencing data

#' @name DPClust
#' @docType package
#' @title Dirichlet Process Clustering of mutations
#' @author Stefan Dentro, \email{sd11@@sanger.ac.uk}
#' @keywords package
#' @import ggplot2
#' @import gridExtra
#' @importFrom ks kde
#' @importFrom KernSmooth bkde2D bkde
#' @importFrom lattice levelplot panel.levelplot panel.abline lpoints
#' @importFrom utils head read.csv read.table write.csv write.table
#' @importFrom grDevices cm.colors colorRampPalette dev.cur dev.off dev.set pdf png rainbow rgb
#' @importFrom graphics hist legend lines par plot points polygon text title
#' @importFrom stats density median pchisq quantile rbeta rbinom rgamma rmultinom runif sd
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