API for Yi-Jiang/MethyGenotyper
MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data
| Global functions | |
|---|---|
| .onAttach | Source code |
| TRACE | Man page Source code |
| backgroundCorrectionNoobFit | Man page Source code |
| callGeno_snp | Man page Source code |
| callGeno_typeI | Man page Source code |
| callGeno_typeII | Man page Source code |
| call_genotypes | Man page Source code |
| constrain_R2 | Man page |
| correct_noob_dye | Man page Source code |
| dosage2hard | Man page |
| eBeta | Man page Source code |
| filter_by_AF | Man page |
| filter_by_HWE | Man page |
| filter_by_R2 | Man page |
| filter_by_missing | Man page |
| fit_beta_em | Man page Source code |
| format_genotypes | Man page |
| getHWE | Man page |
| getKinship | Man page Source code |
| getKinship_het | Man page |
| getMod | Man page Source code |
| getRAI_snp | Man page Source code |
| getRelation | Man page Source code |
| get_AF | Man page Source code |
| get_GP_bayesian | Man page Source code |
| get_indAF | Man page Source code |
| get_target | Man page Source code |
| mnfst | Man page |
| mnfst_450K | Man page |
| mval2beta | Man page Source code |
| normExpSignal | Man page Source code |
| plot_AF | Man page |
| plot_PCA | Man page Source code |
| plot_RAI_distribution | Man page Source code |
| pprocrustes | Man page Source code |
| probeInfo_snp | Man page |
| probeInfo_snp_450K | Man page |
| probeInfo_typeI | Man page |
| probeInfo_typeII | Man page |
| probeInfo_typeII_450K | Man page |
| probeInfo_typeI_450K | Man page |
| probelist | Man page |
| probelist_450K | Man page |
| procrustes | Man page Source code |
| projection | Man page Source code |
| recal_Geno | Man page Source code |
| refGeno_1KGP3 | Man page |
| refGeno_1KGP3_SNP_failQC | Man page |
| sam2pop | Man page |
