probeInfo_typeI: Type I probe information for EPIC

In Yi-Jiang/MethyGenotyper: MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data

Type I probe information for EPIC

Description

A dataset containing Type I probe information.

Usage

data(probeInfo_typeI)

Format

A data frame with 715 rows and 16 columns:

Chr

Chromosome ID

Pos

Position

SNP

SNP ID targeted by the CpG

RefAllele

Reference allele

AltAllele

Alternative allele

CpG

CpG

Color

Color channel

Group

NA

ALL_AF

Allele frequency of all population

EAS_AF

Allele frequency of East Asian

AMR_AF

Allele frequency of American

AFR_AF

Allele frequency of African

EUR_AF

Allele frequency of European

SAS_AF

Allele frequency of South Asian

loc_pass

Passed peak position test or not

Source

https://webdata.illumina.com/downloads/productfiles/methylationEPIC/infinium-methylationepic-v-1-0-b5-manifest-file-csv.zip

Yi-Jiang/MethyGenotyper documentation built on Sept. 4, 2024, 12:47 p.m.