constrain_R2: Constrain R2
In Yi-Jiang/MethyGenotyper: MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data
constrain_R2 R Documentation
Constrain R2
Description
R2 is calculated by var(G)/2p(1-p), where G is dosage genotype and p is allele frequency. Variants with 1<R2<=1.1 are constrained to 1. Variants with R2>1.1 (marked as .) are recommended to remove.
Usage
constrain_R2(R2)
Arguments
R2
R-square
Value
Constrained R2
Yi-Jiang/MethyGenotyper documentation built on Sept. 4, 2024, 12:47 p.m.
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| constrain_R2 | R Documentation |
Constrain R2
Description
R2 is calculated by var(G)/2p(1-p), where G is dosage genotype and p is allele frequency. Variants with 1<R2<=1.1 are constrained to 1. Variants with R2>1.1 (marked as .) are recommended to remove.
Usage
constrain_R2(R2)
Arguments
R2 |
R-square |
Value
Constrained R2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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