getKinship: Get kinship coefficients and inbreeding coefficients using...
In Yi-Jiang/MethyGenotyper: MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data
View source: R/post_genotype_calling.R
getKinship R Documentation
Get kinship coefficients and inbreeding coefficients using the SEEKIN estimator
Description
Only SNPs with missing rate < 10% were used.
Usage
getKinship(dosage)
Arguments
dosage
A matrix of genotype calls. Provide probes as rows and samples as columns.
Value
A list containing
kinship
A data frame containing kinship coefficient (Phi) and sample relationships between each two samples.
inbreed
A vector of inbreeding coefficients.
Yi-Jiang/MethyGenotyper documentation built on Sept. 4, 2024, 12:47 p.m.
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View source: R/post_genotype_calling.R
| getKinship | R Documentation |
Get kinship coefficients and inbreeding coefficients using the SEEKIN estimator
Description
Only SNPs with missing rate < 10% were used.
Usage
getKinship(dosage)
Arguments
dosage |
A matrix of genotype calls. Provide probes as rows and samples as columns. |
Value
A list containing
kinship |
A data frame containing kinship coefficient (Phi) and sample relationships between each two samples. |
inbreed |
A vector of inbreeding coefficients. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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