probeInfo_typeII: Type II probe information for EPIC
In Yi-Jiang/MethyGenotyper: MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data
probeInfo_typeII R Documentation
Type II probe information for EPIC
Description
A dataset containing information of Type II probes with SNPs at the extension bases. We only consider the situation that the alternative allele is A/T and the reference allele is C/G.
Usage
data(probeInfo_typeII)
Format
A data frame with 26420 rows and 16 columns:
- Chr
Chromosome ID
- Pos
Position
- SNP
SNP ID targeted by the CpG
- RefAllele
Reference allele
- AltAllele
Alternative allele
- CpG
CpG
- Color
Color channel
- Group
Probe types, color channel, and signal corresponds to alternative allele
- ALL_AF
Allele frequency of all population
- EAS_AF
Allele frequency of East Asian
- AMR_AF
Allele frequency of American
- AFR_AF
Allele frequency of African
- EUR_AF
Allele frequency of European
- SAS_AF
Allele frequency of South Asian
- loc_pass
Passed peak position test or not
Source
Yi-Jiang/MethyGenotyper documentation built on Sept. 4, 2024, 12:47 p.m.
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| probeInfo_typeII | R Documentation |
Type II probe information for EPIC
Description
A dataset containing information of Type II probes with SNPs at the extension bases. We only consider the situation that the alternative allele is A/T and the reference allele is C/G.
Usage
data(probeInfo_typeII)
Format
A data frame with 26420 rows and 16 columns:
- Chr
Chromosome ID
- Pos
Position
- SNP
SNP ID targeted by the CpG
- RefAllele
Reference allele
- AltAllele
Alternative allele
- CpG
CpG
- Color
Color channel
- Group
Probe types, color channel, and signal corresponds to alternative allele
- ALL_AF
Allele frequency of all population
- EAS_AF
Allele frequency of East Asian
- AMR_AF
Allele frequency of American
- AFR_AF
Allele frequency of African
- EUR_AF
Allele frequency of European
- SAS_AF
Allele frequency of South Asian
- loc_pass
Passed peak position test or not
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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