getKinship_het: Get kinship coefficients using the SEEKIN-het estimator
In Yi-Jiang/MethyGenotyper: MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data
getKinship_het R Documentation
Get kinship coefficients using the SEEKIN-het estimator
Description
Only SNPs with missing rate < 10% were used.
Usage
getKinship_het(dosage, indAF)
Arguments
dosage
A matrix of genotype calls. Provide probes as rows and samples as columns.
indAF
A matrix of individual-specific AFs. Provide probes as rows and samples as columns.
Value
A data frame containing kinship coefficient (Phi) and sample relationships between each two samples.
Yi-Jiang/MethyGenotyper documentation built on Sept. 4, 2024, 12:47 p.m.
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| getKinship_het | R Documentation |
Get kinship coefficients using the SEEKIN-het estimator
Description
Only SNPs with missing rate < 10% were used.
Usage
getKinship_het(dosage, indAF)
Arguments
dosage |
A matrix of genotype calls. Provide probes as rows and samples as columns. |
indAF |
A matrix of individual-specific AFs. Provide probes as rows and samples as columns. |
Value
A data frame containing kinship coefficient (Phi) and sample relationships between each two samples.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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