filter_by_R2: Filter by R2
In Yi-Jiang/MethyGenotyper: MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data
filter_by_R2 R Documentation
Filter by R2
Description
Variants with R2>1.1 (marked as .) or R2<0.75 are recommended to remove.
Usage
filter_by_R2(R2, R2_cutoff_up = 1.1, R2_cutoff_down = 0.75)
Arguments
R2
R-square
R2_cutoff_up
Variants with R-square greater than this cutoff should be removed.
R2_cutoff_down
Variants with R-square less than this cutoff should be removed.
Value
Whether the variant passed filtering.
Yi-Jiang/MethyGenotyper documentation built on Sept. 4, 2024, 12:47 p.m.
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| filter_by_R2 | R Documentation |
Filter by R2
Description
Variants with R2>1.1 (marked as .) or R2<0.75 are recommended to remove.
Usage
filter_by_R2(R2, R2_cutoff_up = 1.1, R2_cutoff_down = 0.75)
Arguments
R2 |
R-square |
R2_cutoff_up |
Variants with R-square greater than this cutoff should be removed. |
R2_cutoff_down |
Variants with R-square less than this cutoff should be removed. |
Value
Whether the variant passed filtering.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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