get_AF: Extract AFs from matching population in the 1000 Genomes...
In Yi-Jiang/MethyGenotyper: MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data
View source: R/call_genotypes.R
get_AF R Documentation
Extract AFs from matching population in the 1000 Genomes Project (1KGP)
Description
Extract AFs from matching population in the 1000 Genomes Project (1KGP)
Usage
get_AF(pop = "EAS", type, platform = "EPIC")
Arguments
pop
Population to be used to extract AFs. One of EAS, AMR, AFR, EUR, SAS, and ALL.
type
One of snp_probe, typeI_probe, and typeII_probe.
platform
EPIC or 450K.
Value
A vector of AFs
Yi-Jiang/MethyGenotyper documentation built on Sept. 4, 2024, 12:47 p.m.
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View source: R/call_genotypes.R
| get_AF | R Documentation |
Extract AFs from matching population in the 1000 Genomes Project (1KGP)
Description
Extract AFs from matching population in the 1000 Genomes Project (1KGP)
Usage
get_AF(pop = "EAS", type, platform = "EPIC")
Arguments
pop |
Population to be used to extract AFs. One of EAS, AMR, AFR, EUR, SAS, and ALL. |
type |
One of snp_probe, typeI_probe, and typeII_probe. |
platform |
EPIC or 450K. |
Value
A vector of AFs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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