projection: PCA and Procrustes analysis
In Yi-Jiang/MethyGenotyper: MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data
View source: R/recalibrate_genotypes.R
projection R Documentation
PCA and Procrustes analysis
Description
PCA and Procrustes analysis
Usage
projection(studyGeno, plotPCA = TRUE, cpu = 1, platform = "EPIC")
Arguments
studyGeno
A matrix of genotypes of study samples. Provide probes as rows and samples as columns. Include all SNP probes, type I probes, and type II probes if available.
plotPCA
To plot the projection of study samples in reference ancestry space.
cpu
Number of CPU.
platform
EPIC or 450K.
Value
A list containing
refPC
Top PCs in the reference
studyPC
Top PCs in study samples
Yi-Jiang/MethyGenotyper documentation built on Sept. 4, 2024, 12:47 p.m.
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View source: R/recalibrate_genotypes.R
| projection | R Documentation |
PCA and Procrustes analysis
Description
PCA and Procrustes analysis
Usage
projection(studyGeno, plotPCA = TRUE, cpu = 1, platform = "EPIC")
Arguments
studyGeno |
A matrix of genotypes of study samples. Provide probes as rows and samples as columns. Include all SNP probes, type I probes, and type II probes if available. |
plotPCA |
To plot the projection of study samples in reference ancestry space. |
cpu |
Number of CPU. |
platform |
EPIC or 450K. |
Value
A list containing
refPC |
Top PCs in the reference |
studyPC |
Top PCs in study samples |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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