probeInfo_typeII_450K: Type II probe information for 450K

In Yi-Jiang/MethyGenotyper: MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data

Type II probe information for 450K

Description

A dataset containing information of Type II probes with SNPs at the extension bases. We only consider the situation that the alternative allele is A/T and the reference allele is C/G.

Usage

data(probeInfo_typeII_450K)

Format

A data frame with 11875 rows and 14 columns:

Chr

Chromosome ID

Pos

Position

SNP

SNP ID targeted by the CpG

RefAllele

Reference allele

AltAllele

Alternative allele

CpG

CpG

Color

Color channel

Group

Probe types, color channel, and signal corresponds to alternative allele

ALL_AF

Allele frequency of all population

EAS_AF

Allele frequency of East Asian

AMR_AF

Allele frequency of American

AFR_AF

Allele frequency of African

EUR_AF

Allele frequency of European

SAS_AF

Allele frequency of South Asian

Source

https://webdata.illumina.com/downloads/productfiles/methylationEPIC/infinium-methylationepic-v-1-0-b5-manifest-file-csv.zip

Yi-Jiang/MethyGenotyper documentation built on Sept. 4, 2024, 12:47 p.m.