Files in Yi-Jiang/MethyGenotyper
MethylGenotyper: Accurate estimation of SNP genotypes from DNA methylation data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/backgroundCorrection.R
R/call_genotypes.R
R/data.R
R/data_representation.R
R/example.R
R/peakDetection.R
R/post_genotype_calling.R
R/recalibrate_genotypes.R
R/snp_probe.R
R/trace.R
R/typeII_probe.R
R/typeI_probe.R
R/utils.R
README.md
data/cpg2snp.rda
data/cpg2snp_450K.rda
data/mnfst.rda
data/mnfst_450K.rda
data/probeInfo_snp.rda
data/probeInfo_snp_450K.rda
data/probeInfo_typeI.rda
data/probeInfo_typeII.rda
data/probeInfo_typeII_450K.rda
data/probeInfo_typeI_450K.rda
data/probelist.rda
data/probelist_450K.rda
data/refGeno_1KGP3.rda
data/refGeno_1KGP3_SNP_failQC.rda
data/sam2pop.rda
data/snp2cpg.rda
data/snp2cpg_450K.rda
man/TRACE.Rd
man/backgroundCorrectionNoobFit.Rd
man/callGeno_snp.Rd
man/callGeno_typeI.Rd
man/callGeno_typeII.Rd
man/call_genotypes.Rd
man/constrain_R2.Rd
man/correct_noob_dye.Rd
man/dosage2hard.Rd
man/eBeta.Rd
man/filter_by_AF.Rd
man/filter_by_HWE.Rd
man/filter_by_R2.Rd
man/filter_by_missing.Rd
man/fit_beta_em.Rd
man/format_genotypes.Rd
man/getHWE.Rd
man/getKinship.Rd
man/getKinship_het.Rd
man/getMod.Rd
man/getRAI_snp.Rd
man/getRelation.Rd
man/get_AF.Rd
man/get_GP_bayesian.Rd
man/get_indAF.Rd
man/get_target.Rd
man/mnfst.Rd
man/mnfst_450K.Rd
man/mval2beta.Rd
man/normExpSignal.Rd
man/plot_AF.Rd
man/plot_PCA.Rd
man/plot_RAI_distribution.Rd
man/pprocrustes.Rd
man/probeInfo_snp.Rd
man/probeInfo_snp_450K.Rd
man/probeInfo_typeI.Rd
man/probeInfo_typeII.Rd
man/probeInfo_typeII_450K.Rd
man/probeInfo_typeI_450K.Rd
man/probelist.Rd
man/probelist_450K.Rd
man/procrustes.Rd
man/projection.Rd
man/recal_Geno.Rd
man/refGeno_1KGP3.Rd
man/refGeno_1KGP3_SNP_failQC.Rd
man/sam2pop.Rd
methyGenotyper.Rproj
vignette/MethylGenotyper_1.0.pdf
vignette/Type_II_probe.png
vignette/Type_I_probe.png
vignette/vignette.Rmd
vignette/vignette.pdf
