Files in YosefLab/SymSim
Simulate Single Cell RNA Sequencing Data
.gitignore
DESCRIPTION
NAMESPACE
R/.Rhistory
R/ContinuousTree.R
R/benchmark_functions.R
R/data.R
R/simulation_functions.R
R/summary_functions.R
README.md
data/gene_len_pool.RData
data/len2nfrag.RData
data/param_realdata.zeisel.imputed.RData
inst/extdata/Newick_ABCDE.txt
inst/extdata/Newick_animals.txt
inst/extdata/Th17_data.RData
inst/extdata/cortex_counts.txt
inst/extdata/grid_summary/mean_bins_UMI.txt
inst/extdata/grid_summary/mean_bins_nonUMI.txt
inst/extdata/grid_summary/nonzero_bins_UMI.txt
inst/extdata/grid_summary/nonzero_bins_nonUMI.txt
inst/extdata/grid_summary/sd_bins_UMI.txt
inst/extdata/grid_summary/sd_bins_nonUMI.txt
inst/extdata/grid_summary/sim_params_UMI.RData
inst/extdata/grid_summary/sim_params_nonUMI.RData
man/.Rapp.history
man/BestMatchParams.Rd
man/ClusterQuality.Rd
man/ContinuousEVF.Rd
man/Dec2k_based.Rd
man/DiscreteEVF.Rd
man/DivideBatches.Rd
man/GeneEffects.Rd
man/Get_params.Rd
man/Get_params2.Rd
man/LogDist.Rd
man/Phyla3.Rd
man/Phyla5.Rd
man/PlotCountHeatmap.Rd
man/PlotPCA.Rd
man/PlotTsne.Rd
man/QQplot2RealData.Rd
man/SampleDen.Rd
man/SimulateTrueCounts.Rd
man/True2ObservedCounts.Rd
man/amplify_1cell.Rd
man/basek2decimal.Rd
man/cal_ARI.Rd
man/cal_AUC.Rd
man/cal_KNNP.Rd
man/cal_amp_bias.Rd
man/cor_pseudotime.Rd
man/cv.Rd
man/dist2diag.Rd
man/evalImpulse.Rd
man/expand2binary.Rd
man/fano.Rd
man/gene_len_pool.Rd
man/getDEgenes.Rd
man/getTrajectoryGenes.Rd
man/len2nfrag.Rd
man/match_params.Rd
man/multiplot.Rd
man/percent_nonzero.Rd
man/plotPCAbasic.Rd
man/plot_nreads_UMI.Rd
man/rand.index.Rd
man/rescale2range.Rd
man/rnorm_trunc.Rd
man/sens_and_spec.Rd
vignettes/SymSimTutorial.Rmd
vignettes/SymSimTutorial.html
vignettes/SymSimTutorial_files/figure-html/unnamed-chunk-10-1.png
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