addUMAP: Adds a UMAP projection

Description Usage Arguments Value

View source: R/AnalysisFunctions.R

Description

Adds a UMAP projection

Usage

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addUMAP(
  object,
  K = object@params$numNeighbors,
  name = "UMAP",
  source = "LatentSpace"
)

Arguments

object

the VISION object

K

Number of neighbors to use in UMAP projection.

name

label to use for this projection

source

coordinates to use to compute tSNE Choices are either "LatentSpace" (default) or "Proteins"

Value

VISION object with the projection added to @Projections slot


YosefLab/VISION documentation built on Sept. 14, 2021, 5:27 p.m.