calc_set_enrichment: Calculate the hypergeometric enrichment for two sets from a...
In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds
View source: R/methods-Module.R
calc_set_enrichment R Documentation
Calculate the hypergeometric enrichment for two sets from a population
Statisic = log (observed overlap / expected overlap)
P value = 1- hypergeometric(observed overlap -1, max(|set1|, |set2|), |genes| - |set1|, min(|set1|, |set2|))
Description
Calculate the hypergeometric enrichment for two sets from a population
Statisic = log (observed overlap / expected overlap)
P value = 1- hypergeometric(observed overlap -1, max(|set1|, |set2|), |genes| - |set1|, min(|set1|, |set2|))
Usage
calc_set_enrichment(set1, set2, genes)
Arguments
set1
the first gene set
set2
the second gene set
genes
the population
Value
c(statistic, p value)
YosefLab/VISION documentation built on Feb. 19, 2023, 9:50 p.m.
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View source: R/methods-Module.R
| calc_set_enrichment | R Documentation |
Calculate the hypergeometric enrichment for two sets from a population Statisic = log (observed overlap / expected overlap) P value = 1- hypergeometric(observed overlap -1, max(|set1|, |set2|), |genes| - |set1|, min(|set1|, |set2|))
Description
Calculate the hypergeometric enrichment for two sets from a population Statisic = log (observed overlap / expected overlap) P value = 1- hypergeometric(observed overlap -1, max(|set1|, |set2|), |genes| - |set1|, min(|set1|, |set2|))
Usage
calc_set_enrichment(set1, set2, genes)
Arguments
set1 |
the first gene set |
set2 |
the second gene set |
genes |
the population |
Value
c(statistic, p value)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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