clusterCells: Creates clustering of the cells
In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds
View source: R/AnalysisFunctions.R
clusterCells R Documentation
Creates clustering of the cells
Description
Uses the Louvain clustering algorithm to cluster the cells in the
transcriptional latent space (default is the top PCs, unless a user
specifies otherwise). If a tree exists, a tree-based clustering is also
performed.
Usage
clusterCells(object, tree = FALSE)
Arguments
object
the VISION object for which to cluster the cells
Details
Results of this are stored as a new variable in the object's metaData
Value
the VISION object modifed as described above
YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.
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View source: R/AnalysisFunctions.R
| clusterCells | R Documentation |
Creates clustering of the cells
Description
Uses the Louvain clustering algorithm to cluster the cells in the transcriptional latent space (default is the top PCs, unless a user specifies otherwise). If a tree exists, a tree-based clustering is also performed.
Usage
clusterCells(object, tree = FALSE)
Arguments
object |
the VISION object for which to cluster the cells |
Details
Results of this are stored as a new variable in the object's metaData
Value
the VISION object modifed as described above
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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