clusterCells: Creates clustering of the cells

View source: R/AnalysisFunctions.R

clusterCellsR Documentation

Creates clustering of the cells

Description

Uses the Louvain clustering algorithm to cluster the cells in the transcriptional latent space (default is the top PCs, unless a user specifies otherwise). If a tree exists, a tree-based clustering is also performed.

Usage

clusterCells(object, tree = FALSE)

Arguments

object

the VISION object for which to cluster the cells

Details

Results of this are stored as a new variable in the object's metaData

Value

the VISION object modifed as described above


YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.