computeKNNWeights-Trajectory-method: Compute KNN weights based on geodesic distances for...

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

Compute KNN weights based on geodesic distances for Trajectory objects

Description

Compute KNN weights based on geodesic distances for Trajectory objects

Usage

## S4 method for signature 'Trajectory'
computeKNNWeights(object, K = round(sqrt(nrow(object))))

Arguments

object	a Trajectory object
K	Number of neighbors to consider.

Value

a list of two items: indices: matrix, cells X neighbors Each row specifies indices of nearest neighbors weights: matrix, cells X neighbors Corresponding weights to nearest neighbors

YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.