analyze-Vision-method: Main entry point for running VISION Analysis

Description Usage Arguments Value Examples

Description

The main analysis function. Runs the entire VISION analysis pipeline and returns a VISION object populated with the result.

Usage

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## S4 method for signature 'Vision'
analyze(object, tree = FALSE, hotspot = FALSE)

Arguments

object

VISION object

tree

whether to use the TREE slot of the object to calculate values

Value

VISION object

Examples

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## Not run: 

vis <- Vision(data = expMat, signatures = sigs)

options(mc.cores=10) # Use 10 cores
vis <- analyze(vis)


## End(Not run)

YosefLab/VISION documentation built on Sept. 14, 2021, 5:27 p.m.