applyFilters: Applies filters to the inputted expression data (may remove...

In YosefLab/VISION: Functional interpretation of single cell RNA-seq latent manifolds

Applies filters to the inputted expression data (may remove rows)

Description

Applies filters to the inputted expression data (may remove rows)

Usage

applyFilters(expr, filterInput, threshold, num_mad)

Arguments

expr	a numeric expression matrix (genes x cells)
filterInput	list of filters to compute
threshold	minimum number of samples gene must be detected in to pass
num_mad	number of median absolute deviations to use in fano filter

Value

character vector of gene names passing filter

YosefLab/VISION documentation built on June 14, 2024, 5:27 p.m.