In YuLab-SMU/ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

#library("txtplot")
library("badger")
library("ypages")
library("yulab.utils")

ChIPseeker: ChIP peak Annotation, Comparison, and Visualization

r badge_bioc_release("ChIPseeker", "green") r badge_devel("guangchuangyu/ChIPseeker", "green")

cat(packageDescription('ChIPseeker')$Description)

:writing_hand: Authors

Guangchuang YU

School of Basic Medical Sciences, Southern Medical University

https://yulab-smu.top

If you use r Biocpkg('ChIPseeker') in published research, please cite:

• Q Wang^#, M Li^#, T Wu, L Zhan, L Li, M Chen, W Xie, Z Xie, E Hu, S Xu, G Yu^*. Exploring epigenomic datasets by ChIPseeker. Current Protocols, 2022, 2(10): e585.
• G Yu^*, LG Wang, QY He^*. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparision and visualization. Bioinformatics. 2015, 31(14):2382-2383.

:arrow_double_down: Installation

Get the released version from Bioconductor:

## try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
## BiocManager::install("BiocUpgrade") ## you may need this
BiocManager::install("ChIPseeker")

Or the development version from github:

## install.packages("devtools")
devtools::install_github("YuLab-SMU/ChIPseeker")

Contributing

We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.

YuLab-SMU/ChIPseeker documentation built on Nov. 2, 2024, 1:45 p.m.