batch_correct: Perform Seurat batch correction
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
Perform Seurat batch correction
Usage
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batch_correct(
data_list,
k_filter = NULL,
dims = 1:30,
refer = NULL,
num_anchor_genes = 2000
)
Arguments
data_list
a list of Seurat objects
k_filter
the neighbourhood for SNN graph. The default is 200 (as
Seurat). If the size of the smallest dataset is smaller than 200, the
k_filter will be selected to be that size regardless of what the supplied
value would be
refer
which dataset is the reference. If NULL, the reference will be
determined automatically
num_anchor_genes
pass to Seurat::FindIntegrationAnchors
anchor.features argument, i.e. the number of genes that form the
integration anchor
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description
Perform Seurat batch correction
Usage
1 2 3 4 5 6 7 | batch_correct(
data_list,
k_filter = NULL,
dims = 1:30,
refer = NULL,
num_anchor_genes = 2000
)
|
Arguments
data_list |
a list of Seurat objects |
k_filter |
the neighbourhood for SNN graph. The default is 200 (as Seurat). If the size of the smallest dataset is smaller than 200, the k_filter will be selected to be that size regardless of what the supplied value would be |
refer |
which dataset is the reference. If NULL, the reference will be determined automatically |
num_anchor_genes |
pass to |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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