dim_plot_cell_similarity: Plot cell-cell similarity in a dimensionality reduction plot

Description Usage Arguments

Description

Plot cell-cell similarity in a dimensionality reduction plot

Usage

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dim_plot_cell_similarity(
  x,
  cell_sim,
  group.by,
  DR = "pca",
  dims = c(1, 2),
  AP = NULL
)

Arguments

x

a Seurat object

cell_sim

cell similarity matrix of N X M, where N is the sample and M is the cell type. M must be equal to the column number of x

group.by

which feature to color

DR

dimensionality reduction assays in x

dims

which dimensions to plot along the x and y axes

aes_param

aesthetic parameters passing to theme_TB


Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.