Plot cell-cell similarity in a dimensionality reduction plot
1 2 3 4 5 6 7 8 | dim_plot_cell_similarity(
x,
cell_sim,
group.by,
DR = "pca",
dims = c(1, 2),
AP = NULL
)
|
x |
a Seurat object |
cell_sim |
cell similarity matrix of N X M, where N is the sample and M
is the cell type. M must be equal to the column number of |
group.by |
which feature to color |
DR |
dimensionality reduction assays in |
dims |
which dimensions to plot along the x and y axes |
aes_param |
aesthetic parameters passing to |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.