cell_violin: Violin plot of cell-cell similarity

In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Description

Take the mean of a correlation matrix all_cor of the cell types or features along its column

Usage

cell_violin(
  all_cor,
  metadata,
  feature,
  column_scale = T,
  row_scale = F,
  num_col = 1,
  box_plot = F,
  AP = list(),
  legend_col = 1
)

Arguments

all_cor	correlation matrix, with both colnames and rownmaes
metadata	the metadata for the items in the correlation matrix, does not need to be in the exact order or shape, but its rownames should match the rownames and colnames of all_cor
feature	cluster by which feature in the metadata
column_scale	zero the mean across columns, make standard deviation 1
num_col	number of columns in which the facets of the subplots will be arranged
AP	aesthetic parameters, cell_order controls the orderring of cells in the violin plot legend and other fields for plotting.
legend_col	in how many columns the legend should be

Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.