compute_all_cor: Compute the difference between every single pair of cells
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
Usage
Arguments
Value
Description
Compute the distance matrix using a user-defined metric
Usage
1
2
3
4
5
6
7
8
compute_all_cor(
x,
method = "correlation",
assay = "integrated",
select_cells1 = NULL,
select_cells2 = NULL,
select_genes = NULL
)
Arguments
x
a Seurat object
method
'correlation', 'partial_corr', or 'distance'
select_cells1
a logical vector selecting the cells forming the rows
of the correlation matrix
select_cells2
similarly for the coluns
select_genes
which genes to compare, default is variable genes
Value
a correlation matrix with select_cells1 along the rows and
select_cells2 along the columns
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Compute the distance matrix using a user-defined metric
Usage
1 2 3 4 5 6 7 8 | compute_all_cor(
x,
method = "correlation",
assay = "integrated",
select_cells1 = NULL,
select_cells2 = NULL,
select_genes = NULL
)
|
Arguments
x |
a Seurat object |
method |
'correlation', 'partial_corr', or 'distance' |
select_cells1 |
a logical vector selecting the cells forming the rows of the correlation matrix |
select_cells2 |
similarly for the coluns |
select_genes |
which genes to compare, default is variable genes |
Value
a correlation matrix with select_cells1 along the rows and select_cells2 along the columns
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.