clean_metadata: Clean metadata of Seurat objects
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
Usage
Arguments
Value
Description
The cell type labels are converted into levelled factors. 'D'
is appended before data labels.
Usage
1
2
3
4
5
6
clean_metadata(
x,
AP = NULL,
cell_type_col = c("revised", "Type", "assigned_cluster", "broad_type"),
date_col = "date"
)
Arguments
AP
aesthetic parameters. The key one is cell_order, which contains
sorting cell order
cell_type_col
on which columns should cell type sorting occur
date_col
which column contains date information
Value
a Seurat object
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description Usage Arguments Value
Description
The cell type labels are converted into levelled factors. 'D' is appended before data labels.
Usage
1 2 3 4 5 6 | clean_metadata(
x,
AP = NULL,
cell_type_col = c("revised", "Type", "assigned_cluster", "broad_type"),
date_col = "date"
)
|
Arguments
AP |
aesthetic parameters. The key one is cell_order, which contains sorting cell order |
cell_type_col |
on which columns should cell type sorting occur |
date_col |
which column contains date information |
Value
a Seurat object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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