colony_count: Count the number of colonies
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory
Description
Usage
Arguments
Value
Description
This function first applies the following filter: remove DBSCAN
outliers, area > 400, number of cells per colony outside the range of 6~300
Secondly, it counts the number of colonies that meet such criteria.
Usage
1
colony_count(dat, control_condition = "GFP", cell_lab = NULL)
Arguments
dat
a dataframe containing the following columns
series: area ID in a culture well
Date: image batch
cluster: the cluster ID assigned to each series
condition: each siRNA condition
Value
a dataframe with the following columns:
series, Date, condition
n: number of colonies
rel_n: colony number relative to the mean in the control condition
Yutong441/TBdev documentation built on Dec. 18, 2021, 8:22 p.m.
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Description Usage Arguments Value
Description
This function first applies the following filter: remove DBSCAN outliers, area > 400, number of cells per colony outside the range of 6~300 Secondly, it counts the number of colonies that meet such criteria.
Usage
1 | colony_count(dat, control_condition = "GFP", cell_lab = NULL)
|
Arguments
dat |
a dataframe containing the following columns
|
Value
a dataframe with the following columns:
series, Date, condition
n: number of colonies
rel_n: colony number relative to the mean in the control condition
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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