custom_net: Customise igraph objects using ggraph
In Yutong441/TBdev: Infer a Trophoblast Developmental Trajectory

Customise igraph objects using ggraph

custom_net(
  igraph_net,
  AP = NULL,
  limits = NA,
  ranges = c(0, 15),
  manual_xy = NULL,
  order_leftright = "pseudotime",
  ascend_order = T,
  coloring = NULL,
  nudge_ratio = 0,
  hide_node_thres = NULL,
  plot_title = NULL,
  size_legend = F
)

`igraph_net`	an igraph object
`manual_xy`	the x and y coordinates for the plots
`order_leftright`	order the points from left to right according to the a feature of the vertices, e.g. pseudotime. If this is set to be NULL, no reordering will occur unless `manual_xy` is not NULL. If `order_leftright` is not NULL, the setting will override that in `manual_xy`.
`ascend_order`	order the pseudotime in the ascending order, i.e. the lowest value will be colored purple, highest yellow according to the viridis scale.
`coloring`	a vector with the same length as the number of nodes that provide the colors
`nudge_ratio`	by how much the labels are radiated from the center
`hide_node_thres`	below which node size are the nodes and the associated connections hidden.