Bioconductor2GO: Check available organisms databases at Bioconductor.

In abrionne/ViSEAGO: ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity

Description

Retrieve the Bioconductor OrgDb available organisms databases packages.

Usage

Bioconductor2GO()

Details

This function gives genome wide annotation for available organisms databases packages from Bioconductor OrgDb. It uses loadAnnDbPkgIndex from AnnotationForge package.

Value

a genomic_ressource-class object required by annotate method.

References

Carlson M and Pages H (2017). AnnotationForge: Code for Building Annotation Database Packages. R package version 1.18.0.

See Also

Other genomic_ressource: Custom2GO, Ensembl2GO, EntrezGene2GO, Uniprot2GO, annotate, available_organisms, genomic_ressource-class, taxonomy

Examples

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# Check Bioconductor OrgDb available organisms
Bioconductor<-ViSEAGO::Bioconductor2GO()

abrionne/ViSEAGO documentation built on June 13, 2019, 2:27 p.m.