genomic_ressource-class: genomic_ressource class object definition.

In abrionne/ViSEAGO: ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity

Description

This class stores the annotations and associated metadata obtained by Bioconductor2GO, EntrezGene2GO, Ensembl2GO, or Uniprot2GO .

Slots

db

name of database used (Bioconductor, EntrezGene, Ensembl, or Uniprot).

stamp

date of stamp (for Bioconductor, EntrezGene, and Uniprot), or annotation version for Ensembl database.

data

GO annotations from EntrezGene2GO method.

organisms

informations about species/datasets availables.

mart

Ensembl mart from Ensembl2GO method.

See Also

Other genomic_ressource: Bioconductor2GO, Custom2GO, Ensembl2GO, EntrezGene2GO, Uniprot2GO, annotate, available_organisms, taxonomy

abrionne/ViSEAGO documentation built on June 13, 2019, 2:27 p.m.