Upset-methods: Enriched GO terms intersections plot.

In abrionne/ViSEAGO: ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity

Description

This method allows to visualize GO terms intersections between results of enrichment tests.

Usage

Upset(object, file = "./upset.xls")

## S4 method for signature 'ANY'
Upset(object, file = "./upset.xls")

Arguments

object	an enrich_GO_terms-class or GO_clusters-class objects.
file	output file name (default to "./upset.xls")

Details

This function displays the intersections of enriched GO terms (p<0.01) between all results provided by enrich_GO_terms-class or GO_clusters-class objects. The intersections are shown in an upset plot and printed in a table.

Value

print table and upset.

See Also

Other enrich_GO_terms: enrich_GO_terms-class, overLapper, show_heatmap, show_table

Other visualization: GOclusters_heatmap, GOcount, GOterms_heatmap, available_organisms, overLapper, show_heatmap, show_table

Examples

##################
# load example object
data(
    myGOs,
    package="ViSEAGO"
)

##################
# print upset
ViSEAGO::Upset(myGOs)

abrionne/ViSEAGO documentation built on June 13, 2019, 2:27 p.m.