GOcount-methods: Barplot for the count of GO terms.

Description Usage Arguments Details Value References See Also Examples

Description

This method displays in barplot the count of GO terms splitted in two categories (significant or not) for each result of GO enrichment tests.

Usage

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GOcount(object, file = NULL)

## S4 method for signature 'ANY'
GOcount(object, file = NULL)

Arguments

object

an enrich_GO_terms-class object from merge_enrich_terms method.

file

the name of the output file (default to NULL for interactive screen display).

Details

This method displays an interactive barplot, using plotly package, from a merge_enrich_terms output object.
A static image (in png) could be printed by setting file argument.

Value

a barplot.

References

Carson Sievert, Chris Parmer, Toby Hocking, Scott Chamberlain, Karthik Ram, Marianne Corvellec and Pedro Despouy (2017). plotly: Create InteractiveWeb Graphics via 'plotly.js'. R package version 4.6.0. https://CRAN.R-project.org/package=plotly.

See Also

Other GO_terms: GOterms_heatmap, annotate, create_topGOdata, gene2GO-class, merge_enrich_terms

Other visualization: GOclusters_heatmap, GOterms_heatmap, Upset, available_organisms, overLapper, show_heatmap, show_table

Examples

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###################
# load object
utils::data(
 myGOs,
 package="ViSEAGO"
)

###################
# barplot for the count of GO terms
ViSEAGO::GOcount( myGOs)

abrionne/ViSEAGO documentation built on June 13, 2019, 2:27 p.m.