Uniprot2GO: Check available organisms databases at Uniprot.

In abrionne/ViSEAGO: ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity

Description

Check the Uniprot-GOA available organisms.

Usage

Uniprot2GO()

Details

This function downloads the current_release_numbers file (ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/current_release_numbers.txt) from Uniprot-GOA which contains available organisms.

Value

a genomic_ressource-class object required by annotate.

References

Matt Dowle and Arun Srinivasan (2017). data.table: Extension of 'data.frame'. R package version 1.10.4. https://CRAN.R-project.org/package=data.table.

Huntley, RP, Sawford, T, Mutowo-Meullenet, P, Shypitsyna, A, Bonilla, C, Martin, MJ, O'Donovan, C (2015). The GOA database: gene Ontology annotation updates for 2015. Nucleic Acids Res., 43, Database issue:D1057-63.

See Also

Other genomic_ressource: Bioconductor2GO, Custom2GO, Ensembl2GO, EntrezGene2GO, annotate, available_organisms, genomic_ressource-class, taxonomy

Examples

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# List Uniprot-GOA available organisms
Uniprot<-ViSEAGO::Uniprot2GO()

abrionne/ViSEAGO documentation built on June 13, 2019, 2:27 p.m.